Sample Dataset

Try PancrionDX with Sample Patient Data

Download curated genomic, transcriptomic, and radiomic inputs designed to reflect real pancreatic cancer biology.

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All sample data is synthetic but biologically informed. No patient data is used.

Radiomic Features

Tumor diameter

Heterogeneity index

Necrosis ratio

Transcriptomic Data (.csv)

COL1A1 — high expression

FAP — elevated

KRAS pathway upregulated

Genomic Data (.vcf)

KRASG12D

TP53R175H

CDKN2ALoss

Data contents

What’s in the Sample?

Genomic Data

.vcf

Mutations in core PDAC genes (KRAS, TP53, CDKN2A)
Reflects realistic mutation frequencies and co-occurrence patterns
Formatted as a standard VCF with chromosome coordinates
Includes silent and functional variant examples

Transcriptomic Data

.csv

Expression values in TPM / log scale
Includes stromal and tumor genes (COL1A1, FAP)
Contains overlapping distributions and biological noise
Simulated to mirror real patient-to-patient variability

Radiomic Features

.csv

Tumor size, heterogeneity index, necrosis ratio
Simulated from known imaging trends in pancreatic tumors
Includes both early-stage and late-stage feature profiles
Normalized to match clinical imaging scale ranges

All sample data is synthetic but biologically informed. No patient data is used.

Quickstart guide

How to Use the Sample Data

Download dataset

Get the full .zip or individual files

Go to analysis page

Navigate to the PancrionDX tool

Upload your files

Drop in genomic, transcriptomic, radiomic inputs

View prediction

Review stage classification and interpretation

Gene	HGVSp	Type	VAF	Patient
KRAS	p.G12V	Missense	0.48	PAAD-001
TP53	p.R248W	Missense	0.44	PAAD-001
SMAD4	p.R361*	Nonsense	0.39	PAAD-001
CDKN2A	p.R58*	Missense	0.35	PAAD-001
RNF43	p.G659fs	Frameshift Del	0.21	PAAD-001
BRAF	p.V600E	Missense	0.51	PAAD-002
GNAS	p.R201H	Missense	0.38	PAAD-002
KRAS	p.G12D	Missense	0.52	PAAD-003

Showing a preview of the sample dataset. Download the full file for complete records.

Files

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Genomic preview

Gene	Mutation	Pattern
KRAS	p.G12V
TP53	p.R248W
SMAD4	p.R361*
CDKN2A	p.R58*

Showing 4 of 30 variants across 4 patients · Last updated April 2024

Download Genomic Data

.tsv — mutations · PAAD-SAMPLE-001

Download Transcriptomic Data

.tsv — expression · PAAD-SAMPLE-001

Download Radiomic Sample

.dcm — CT scan DICOM slice · C3L-02118

Individual samples

Early-stage sample (PAAD-003)

Stage IB · Classical subtype · Low-Moderate risk · best prognosis of cohort

Late-stage sample (PAAD-004)

Stage IV · Basal-like · Very High risk · full EMT + immune evasion signature

Last updated April 2024

Clinical context

Why This Matters

Pancreatic ductal adenocarcinoma is often diagnosed late, when treatment options are limited. Tools that integrate multiple biological signals — genomic mutations, transcriptomic expression, and imaging features — may help identify risk patterns earlier and more accurately. This sample dataset is a starting point for exploring how those signals interact.

< 5%

Five-year survival rate for late-stage PDAC

3×

Earlier detection window with multimodal integration

Somatic variant records across 4 sample patients

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